STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_0749Probable dolichyl-phosphate b-D-mannosyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/COG0463. (316 aa)    
Predicted Functional Partners:
CV_0745
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
 
 
 0.988
CV_0747
Probable transformylase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0451.
  
 0.986
CV_0748
Probable transformylase; Identified by sequence similarity; putative; ORF located using Blastx/COG0223.
  
 0.978
CV_0752
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1807.
 
  
 0.962
CV_0750
Probable glutamine-scyllo-inositol transaminase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0399; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.913
CV_1161
Probable melitin resistence protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1807.
 
  
 0.912
CV_0751
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0697/TC:2.A.7.1.3.
 
  
 0.904
spsC
Spore coat polysaccharide biosynthesis protein C; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0399; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.571
CV_0914
Probable transmembrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1807.
 
  
 0.568
ugd
UDP-glucose dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1004.
 
  
 0.471
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.