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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_0752Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1807. (553 aa)    
Predicted Functional Partners:
CV_0745
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
  
 0.966
CV_0749
Probable dolichyl-phosphate b-D-mannosyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/COG0463.
 
  
 0.952
CV_0751
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0697/TC:2.A.7.1.3.
 
  
 0.943
CV_0748
Probable transformylase; Identified by sequence similarity; putative; ORF located using Blastx/COG0223.
 
  
 0.911
CV_0747
Probable transformylase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0451.
 
  
 0.875
CV_1160
Probable glycosyl transferase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0463/TC:9.B.32.1.3.
 
  
 0.814
CV_0750
Probable glutamine-scyllo-inositol transaminase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0399; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.711
CV_0914
Probable transmembrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1807.
  
     0.679
CV_4294
Hypothetical protein.
 
     0.467
lpxB
lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
   
 0.454
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.