Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cstA2Carbon starvation protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1966. (688 aa)    
Predicted Functional Partners:
CV_0761
Probable two-component response regulator; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0745.
     
 0.511
CV_0760
Probable two-component sensor protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0642.
       0.508
rbsA
D-ribose transport system ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
   
  
 0.480
rbsC
D-ribose transport system permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1172/TC:3.A.1.2.1; Belongs to the binding-protein-dependent transport system permease family.
   
    0.464
CV_1102
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2764.
   
    0.456
CV_1319
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2764.
   
    0.456
CV_0392
Probable transcription regulator protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3284.
   
    0.404
CV_0377
Probable ribose ABC transporter, substrate binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1879/TC:3.A.1.2.1.
   
  
 0.403
CV_2522
Probable ribose ABC transporter, substrate binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1879/TC:3.A.1.2.1.
   
  
 0.403
rbsB
Ribose ABC transporter, substrate binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1879/TC:3.A.1.2.1.
   
  
 0.403
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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