Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
kpsDCapsule polysaccharide export system periplasmic protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG1596/TC:1.B.18.1.2. (630 aa)    
Predicted Functional Partners:
CV_0772
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3206/TC:8.A.3.3.2.
 
  
 0.994
CV_0774
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
 
  
 0.922
mrp
Mrp protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 
 0.854
CV_3880
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0463.
  
  
 0.823
CV_3179
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2148.
  
  
 0.805
CV_4117
Probable glycosyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/COG2148.
  
  
 0.805
CV_4115
Probable polysaccharide biosynthesis protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1086.
  
  
 0.798
manC
Mannose-1-phosphate guanylyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/COG0662; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.731
CV_0818
Probable glycosyltransferase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0463.
 
  
 0.690
CV_0228
Probable beta-1,4- glucosyltransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0463.
  
  
 0.580
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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