STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_0774Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx. (953 aa)    
Predicted Functional Partners:
kpsD
Capsule polysaccharide export system periplasmic protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG1596/TC:1.B.18.1.2.
 
  
 0.922
CV_0772
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3206/TC:8.A.3.3.2.
 
     0.907
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.561
CV_2089
Probable ATP-dependent RNA helicase; Identified by sequence similarity; putative; ORF located using Blastx/COG0513.
  
     0.538
CV_2550
Probable mitomycin resistance protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0177.
  
     0.532
CV_0461
Probable cytochrome P-450; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2124.
  
 0.499
CV_1939
Hypothetical protein.
  
 0.499
CV_2656
Probable cytochrome P450 hydroxylase; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG2124; Belongs to the cytochrome P450 family.
  
 0.499
CV_2011
Hypothetical protein.
  
     0.489
fadD1
Long chain fatty-acid CoA ligase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0318/TC:9.B.17.1.4.
    
  0.441
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.