Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CV_0785Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0500. (198 aa)    
Predicted Functional Partners:
metXS
Probable homoserine O-acetyltransferase; Transfers a succinyl group from succinyl-CoA to L-homoserine, forming succinyl-L-homoserine.
  
 0.998
CV_0784
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
       0.697
thrB
Ketohexokinase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2334; Belongs to the pseudomonas-type ThrB family.
  
     0.683
ampG
MFS family, muropeptide transporter; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.25.2.
       0.551
CV_0787
Hypothetical protein.
       0.517
CV_0788
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1242.
       0.401
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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