STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_0793Probable nitrogen fixation protein VnfA; Identified by sequence similarity; putative; ORF located using Blastx/COG0348. (485 aa)    
Predicted Functional Partners:
CV_0794
Probable high-affinity iron permease; Identified by sequence similarity; putative; ORF located using Blastx/COG0672/TC:9.A.10.1.1.
 
    0.984
CV_0796
Probable periplasmic protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3470.
 
  
 0.929
CV_0795
Hypothetical protein.
 
    0.906
CV_0792
Probable ABC transporter, periplasmic binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0834.
       0.594
coxB
Cytochrome-c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
  
 0.568
CV_1173
Probable cytochrome-c oxidase, subunit II; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2993.
  
  
 0.564
CV_1172
Hypothetical protein.
  
  
 0.554
fdoH
Formate dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0437/TC:5.A.3.2.1.
  
  
 0.532
nuoI
NADH-ubiquinone oxidoreductase, chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
 
 0.513
fdx1
Ferredoxin [4Fe-4S; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1145.
  
 
 0.513
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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