Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_0794Probable high-affinity iron permease; Identified by sequence similarity; putative; ORF located using Blastx/COG0672/TC:9.A.10.1.1. (249 aa)    
Predicted Functional Partners:
CV_0793
Probable nitrogen fixation protein VnfA; Identified by sequence similarity; putative; ORF located using Blastx/COG0348.
 
    0.984
CV_0796
Probable periplasmic protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3470.
 
  
 0.963
CV_0795
Hypothetical protein.
 
   
 0.910
CV_1938
Probable peroxidase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
  
  
 0.662
CV_0792
Probable ABC transporter, periplasmic binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0834.
       0.594
fbpA
ABC transporter, iron binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1840/TC:3.A.1.10.2.
   
  
 0.464
znuC
Zinc transport system ATP-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1121.
 
  
 0.446
CV_3044
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
 
    0.445
aniA
Nitrite reductase; Identified by sequence similarity; putative; ORF located using Blastx/COG2132; Belongs to the multicopper oxidase family.
     
 0.422
CV_1170
Probable iron-sulfur 4Fe-4S ferredoxin transmembrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0348.
  
    0.402
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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