Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_0799Probable transcriptional regulator, AraC/XylS family; Identified by sequence similarity; putative; ORF located using Blastx/COG2207. (257 aa)    
Predicted Functional Partners:
sir2
Transcriptional regulator; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily.
  
    0.669
flgG2
Flagellar basal-body rod protein flgG; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1749; Belongs to the flagella basal body rod proteins family.
    
   0.662
flgG1
Flagellar basal-body rod protein FlgG; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1749; Belongs to the flagella basal body rod proteins family.
    
   0.662
fsr
Fosmidomycin resistance protein, MFS family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.35.1.
 
   
 0.659
araC
Transcriptional regulator; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2207.
  
   0.515
hutC
Histidine utilization repressor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2188.
  
  
 0.500
CV_0555
Probable transcriptional regulator, GntR family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2188.
  
  
 0.500
CV_1063
Probable transcriptional regulator, GntR family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2188.
  
  
 0.500
phnF
Transcriptional regulator, GntR family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2188.
  
  
 0.500
treR
Transcriptional repressor of the trehalose operon; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2188.
  
  
 0.500
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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