STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_0804Probable taurine dioxygenase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2175. (280 aa)    
Predicted Functional Partners:
CV_0806
Probable nikkomycin biosynthesis protein, carboxylase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
     
 0.798
CV_0805
Probable 3-oxoacyl-[acyl-carrier-protein] synthase III; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0332.
       0.773
tauA
Taurine transport system substrate-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0715/TC:3.A.1.17.1.
  
 0.751
CV_0802
Hypothetical protein.
       0.701
CV_0803
Probable 5-aminolevulinate synthase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0156.
       0.701
tauB
Taurine ATP-binding component of a transport system; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family.
 
    0.685
tauC
Taurine transport system permease protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0600/TC:3.A.1.17.1.
  
 0.599
CV_2289
Probable taurine transport system substrate-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0715/TC:3.A.1.17.2.
 
  
 0.584
CV_2802
Probable peptide synthetase protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1020.
 
  
 0.559
cbsF
Synthetase CbsF; Identified by sequence similarity; putative; ORF located using Blastx/COG0365/TC:9.B.17.1.4.
 
  
 0.553
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.