STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_0808Probable zinc-containing alcohol dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2130. (330 aa)    
Predicted Functional Partners:
wrbA
Trp repressor binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0655; Belongs to the WrbA family.
  
    0.631
CV_0701
Probable oxidoreductase; Identified by sequence similarity; putative; ORF located using Blastx.
   
 
 0.614
qor
Quinone oxidoreductase; Identified by sequence similarity; putative; ORF located using Blastx/COG0604.
 
  
 0.541
katE
Catalase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0753; Belongs to the catalase family.
  
  
 0.479
CV_2794
Probable trp repressor binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0655.
  
    0.466
CV_2043
Probable quinone oxidoreductase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0604.
 
  
0.457
CV_1630
Probable oxidoreductase; Identified by sequence similarity; putative; ORF located using Blastx/COG0604; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily.
 
  
 0.422
ohr2
Organic hydroperoxide resistance protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1764.
    0.408
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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