STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wrbATrp repressor binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0655; Belongs to the WrbA family. (198 aa)    
Predicted Functional Partners:
CV_2794
Probable trp repressor binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0655.
  
  
 
0.927
ubiE
Ubiquinone/menaquinone biosynthesis methlytransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
     
  0.900
katE
Catalase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0753; Belongs to the catalase family.
  
  
 0.758
dps
DNA-binding stress protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0783; Belongs to the Dps family.
  
  
 0.737
CV_4266
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1652.
   
  
 0.691
prkA
Protein kinase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2766.
   
    0.679
CV_3758
Hypothetical protein.
   
  
 0.678
CV_0808
Probable zinc-containing alcohol dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2130.
  
    0.663
rbn
Ribonuclease BN; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1295.
       0.629
CV_3552
Probable bacterioferritin; Identified by sequence similarity; putative; ORF located using Blastx/COG2193; Belongs to the bacterioferritin family.
   
  
 0.585
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.