STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_0818Probable glycosyltransferase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0463. (307 aa)    
Predicted Functional Partners:
CV_0817
Probable glycosyltransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0438.
 
 
 0.802
CV_3166
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0056.
   
    0.802
kpsD
Capsule polysaccharide export system periplasmic protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG1596/TC:1.B.18.1.2.
 
  
 0.699
osmB
Osmotically inducible lipoprotein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
   
  
 0.692
CV_0819
Probable nucleotide sugar epimerase; Identified by sequence similarity; putative; ORF located using Blastx/COG0451.
 
 
 0.669
CV_0820
Probable O-antigen ligase; Identified by sequence similarity; putative; ORF located using Blastx/COG3307.
  
  
 0.658
CV_0816
Probable phosphoenolpyruvate-protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).
       0.600
rfaB
Lipopolysaccharide glucosyltransferase I; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0438.
 
 
 0.590
CV_4117
Probable glycosyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/COG2148.
 
  
 0.578
glmS
Glucosamine-fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
  
  
 0.564
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.