Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_0820Probable O-antigen ligase; Identified by sequence similarity; putative; ORF located using Blastx/COG3307. (429 aa)    
Predicted Functional Partners:
CV_0817
Probable glycosyltransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0438.
  
 
 0.961
rfaF
ADP-heptose--LPS heptosyltransferase II; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0859.
  
 
 0.935
rfaC
Lipopolysaccharide heptosyltransferase I; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0859.
  
 
 0.927
rfaQ
Lipopolysaccharide glucosyltransferase I; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0859.
  
 
 0.927
CV_0225
Probable 3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.920
CV_0819
Probable nucleotide sugar epimerase; Identified by sequence similarity; putative; ORF located using Blastx/COG0451.
     
 0.785
CV_0818
Probable glycosyltransferase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0463.
  
  
 0.655
CV_3880
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0463.
  
  
 0.620
manC
Mannose-1-phosphate guanylyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/COG0662; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.617
CV_4026
Probable lipopolysaccharide biosynthesis protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG2244/TC:2.A.66.2.5.
  
  
 0.598
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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