Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
rfbULipopolysaccharide biosynthesis protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0438. (346 aa)    
Predicted Functional Partners:
msbA
Transport ATP-binding protein msbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
   
 
 0.762
CV_0823
Hypothetical protein.
       0.565
ugd
UDP-glucose dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1004.
 
  
 0.561
CV_0228
Probable beta-1,4- glucosyltransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0463.
  
 0.540
rfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.510
rfbC
dTDP-6-deoxy-D-glucose-3,5 epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.508
rmlB
dTDPglucose 4,6-dehydratase; Identified by sequence similarity; putative; ORF located using Blastx/COG1088; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.500
CV_4117
Probable glycosyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/COG2148.
 
  
 0.488
CV_4026
Probable lipopolysaccharide biosynthesis protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG2244/TC:2.A.66.2.5.
  
  
 0.484
wzx
O-antigen translocase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2244/TC:2.A.66.2.2.
  
  
 0.459
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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