Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilPType 4 fimbrial biogenesis protein PilP; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3168. (172 aa)    
Predicted Functional Partners:
pilQ
Type 4 fimbrial biogenesis protein PilQ; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1450/TC:1.B.22.2.1.
 
 
 0.999
pilN
Type 4 fimbrial biogenesis protein PilN; Identified by sequence similarity; putative; ORF located using Blastx.
 
  
 0.995
pilO
Type 4 fimbrial biogenesis protein PilO; Identified by sequence similarity; putative; ORF located using Blastx/COG3167.
 
  
 0.992
pilM
Type 4 fimbrial biogenesis protein PilM; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0849.
 
  
 0.969
pilZ
Type 4 fimbrial biogenesis protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3215.
  
   
 0.830
CV_0482
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3419.
  
  
 0.823
pilE3
Type IV pilin; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2165.
  
  
 0.823
pilE1
Type IV pilin; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2165.
  
  
 0.810
CV_3540
Probable fimbrial biogenesis and twitching motility protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0457.
  
   
 0.809
CV_4079
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2165.
  
  
 0.803
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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