Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_0837Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/TC:1.B.12.1.1. (1128 aa)    
Predicted Functional Partners:
shlB
Hemolysin activator protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2831/TC:1.B.20.1.1.
 
 
 0.792
CV_2873
Probable hemolysin activator protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG2831/TC:1.B.20.1.1.
 
 
 0.772
CV_3513
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3220; Belongs to the UPF0276 family.
   
    0.758
CV_3511
Probable signal peptide protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
   
    0.701
CV_3512
Probable signal peptide protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
   
    0.701
fimD
Outer membrane usher protein precursor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3188/TC:1.B.11.3.1.
  
  
 0.687
ecpD
Chaperone protein ecpD precursor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3121.
  
  
 0.659
CV_4064
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
  
 
 0.589
CV_2128
Probable bacteriophage tail sheath protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
 
  
 0.563
CV_2140
Probable portal protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
  
    0.542
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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