Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| rplD | rplK | CV_4185 | CV_4197 | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.996 |
| rplD | rplS | CV_4185 | CV_3672 | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.995 |
| rplD | rplT | CV_4185 | CV_1351 | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.995 |
| rplD | rplU | CV_4185 | CV_0848 | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.995 |
| rplD | rpmA | CV_4185 | CV_0849 | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 50S ribosomal protein L27; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0211; Belongs to the bacterial ribosomal protein bL27 family. | 0.995 |
| rplD | rpmB | CV_4185 | CV_3456 | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 50S ribosomal protein L28; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0227; Belongs to the bacterial ribosomal protein bL28 family. | 0.992 |
| rplD | rpmF | CV_4185 | CV_3418 | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 50S ribosomal protein L32; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0333; Belongs to the bacterial ribosomal protein bL32 family. | 0.994 |
| rplD | rpsB | CV_4185 | CV_2196 | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 30S ribosomal protein S2; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0052; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
| rplD | rpsI | CV_4185 | CV_3696 | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 30S ribosomal protein S9; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0103; Belongs to the universal ribosomal protein uS9 family. | 0.996 |
| rplD | rpsP | CV_4185 | CV_3675 | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 30S ribosomal protein S16; Identified by sequence similarity; putative; ORF located using Blastx; Belongs to the bacterial ribosomal protein bS16 family. | 0.993 |
| rplK | rplD | CV_4197 | CV_4185 | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.996 |
| rplK | rplS | CV_4197 | CV_3672 | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.995 |
| rplK | rplT | CV_4197 | CV_1351 | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.993 |
| rplK | rplU | CV_4197 | CV_0848 | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.995 |
| rplK | rpmA | CV_4197 | CV_0849 | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 50S ribosomal protein L27; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0211; Belongs to the bacterial ribosomal protein bL27 family. | 0.994 |
| rplK | rpmB | CV_4197 | CV_3456 | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 50S ribosomal protein L28; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0227; Belongs to the bacterial ribosomal protein bL28 family. | 0.995 |
| rplK | rpmF | CV_4197 | CV_3418 | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 50S ribosomal protein L32; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0333; Belongs to the bacterial ribosomal protein bL32 family. | 0.993 |
| rplK | rpsB | CV_4197 | CV_2196 | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 30S ribosomal protein S2; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0052; Belongs to the universal ribosomal protein uS2 family. | 0.996 |
| rplK | rpsI | CV_4197 | CV_3696 | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 30S ribosomal protein S9; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0103; Belongs to the universal ribosomal protein uS9 family. | 0.996 |
| rplK | rpsP | CV_4197 | CV_3675 | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 30S ribosomal protein S16; Identified by sequence similarity; putative; ORF located using Blastx; Belongs to the bacterial ribosomal protein bS16 family. | 0.995 |
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