Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_0856Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3042. (85 aa)    
Predicted Functional Partners:
CV_0857
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
       0.773
fimA
Fimbrial subunit protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3539.
  
     0.607
cdh
CDPdiacylglycerol diphosphatase; Identified by sequence similarity; putative; ORF located using Blastx/COG2134.
  
     0.596
CV_0858
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
       0.594
CV_2465
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1695.
  
     0.489
ecpD
Chaperone protein ecpD precursor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3121.
  
     0.478
rna
RNase; Identified by sequence similarity; putative; ORF located using Blastx; Belongs to the RNase T2 family.
  
     0.422
fimD
Outer membrane usher protein precursor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3188/TC:1.B.11.3.1.
  
     0.411
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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