STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_0881Hypothetical protein. (203 aa)    
Predicted Functional Partners:
rsbT
sigma-B regulator protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0642.
 
 0.996
CV_0879
Hypothetical protein.
 
 
 0.991
rsbR
sigma-B regulator; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0840.
 
 
 0.988
CV_3248
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0784.
 
  
 0.922
CV_0882
Probable sensor/response regulator hybrid protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0784.
  
  
 0.912
CV_1621
Probable sensor/response regulatory hybrid protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0784.
  
  
 0.911
CV_1951
Probable two-component sensor; Identified by sequence similarity; putative; ORF located using Blastx/COG0784.
  
  
 0.909
CV_2643
Probable sensor/response regulator hybrid; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0784.
  
  
 0.909
flgJ
Flagellar protein flgJ; Identified by sequence similarity; putative; ORF located using Blastx/COG1705.
   
    0.909
evgS
Sensor protein evgS precursor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0784.
  
  
 0.889
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.