Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_0883Probable two component system, transcriptional regulatory protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3437/TC:3.A.1.115.1. (360 aa)    
Predicted Functional Partners:
CV_0812
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2199.
 
 0.946
CV_0882
Probable sensor/response regulator hybrid protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0784.
 
0.939
CV_0387
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2202.
 
 
    0.914
CV_4087
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2199.
 
    0.885
CV_0091
Probable two-component response regulator; Identified by sequence similarity; putative; ORF located using Blastx/COG0745.
  
 0.869
CV_0208
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2199.
    0.860
CV_1581
Probable sensor/response hybrid; Identified by sequence similarity; putative; ORF located using Blastx/COG0784.
 
 0.841
CV_1951
Probable two-component sensor; Identified by sequence similarity; putative; ORF located using Blastx/COG0784.
 
 0.839
CV_2643
Probable sensor/response regulator hybrid; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0784.
 
 
 0.839
CV_3461
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1196.
 
    0.831
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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