Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
qseCSensor protein qseC; Identified by sequence similarity; putative; ORF located using Blastx/COG0642. (448 aa)    
Predicted Functional Partners:
qseB
Transcriptional regulatory protein qseB; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0745.
 0.998
CV_2635
Probable two-component response regulator; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0745.
 0.983
kdpE
Kdp operon transcriptional regulatory protein kdpE; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0745.
 
 0.981
armS
Two-component sensor kinase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0642.
  
  
 
0.927
CV_4220
Probable two-component transcriptional regulator; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2204.
   
 0.912
CV_0593
Probable two-component system response regulator; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0745.
 
 0.835
CV_3503
Probable sensor/response regulator hybrid; Identified by sequence similarity; putative; ORF located using Blastx/COG0784.
  
 
 0.814
creB
Transcriptional regulator; Identified by sequence similarity; putative; ORF located using Blastx/COG0745.
 
 0.799
ompR
Response regulator OmpR; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0745.
 
 0.797
CV_1621
Probable sensor/response regulatory hybrid protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0784.
  
 
 0.792
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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