Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oprCOuter membrane protein OprC complement; Identified by sequence similarity; putative; ORF located using Blastx/COG1629/TC:1.B.14.4.2. (642 aa)    
Predicted Functional Partners:
entB
Isochorismatase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1535.
  
  
 0.719
CV_0896
Probable two-component sensor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0642.
       0.581
hydG
Two-component response sensor- transcriptional regulatory protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0784.
       0.581
CV_0894
Hypothetical protein.
       0.570
CV_0893
Probable 5-carboxymethyl-2-hydroxymuconate D-isomerase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3232.
       0.566
CV_1151
Probable murein hydrolase exporter; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1380/TC:1.E.14.1.1.
  
     0.494
entF
Enterobactin synthetase component F; Identified by sequence similarity; putative; ORF located using Blastx/COG1020.
  
  
 0.483
cbsF
Synthetase CbsF; Identified by sequence similarity; putative; ORF located using Blastx/COG0365/TC:9.B.17.1.4.
  
  
 0.483
CV_2802
Probable peptide synthetase protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1020.
  
  
 0.483
CV_0400
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0810/TC:2.C.1.1.1.
 
 
 0.473
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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