Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CV_0917Probable C4-dicarboxylate transporter large subunit; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1593/TC:2.A.56.1.1. (442 aa)    
Predicted Functional Partners:
dctQ
C4-dicarboxylate transport system, permease small subunit; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3090/TC:2.A.56.1.1.
 
 0.999
CV_0919
Probable C4-dicarboxylate-binding periplasmic protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1638/TC:2.A.56.1.1.
  
 0.980
CV_1370
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1638/TC:2.A.56.1.1.
 
  
 0.831
maeB
NADP-dependent malate dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0281.
       0.510
CV_0920
Probable two-component transmembrane sensor; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0642.
 
   
 0.494
sucD
succinyl-CoA synthetase alpha chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
   
    0.456
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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