Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CV_0971Probable fumarylacetoacetate hydrolase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0179. (325 aa)    
Predicted Functional Partners:
CV_0972
Probable glutathione transferase zeta 1; Identified by sequence similarity; putative; ORF located using Blastx/COG0625.
 
 0.998
hmgA
Homogentisate 1,2-dioxygenase; Identified by sequence similarity; putative; ORF located using Blastx/COG3508.
 
  
 0.968
hpd
4-hydroxyphenylpyruvate dioxygenase; Identified by sequence similarity; putative; ORF located using Blastx/COG3185.
 
  
 0.910
fumC
Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
   
 0.830
sdhA
Succinate dehydrogenase, flavoprotein subunit; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1053; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 
  0.822
frdA
Fumarate reductase flavoprotein subunit; Identified by sequence similarity; putative; ORF located using Blastx/COG1053.
  
 
  0.822
sdhB
Succinate dehydrogenase iron-sulfur protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0479; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
  
 
  0.814
frdB
Fumarate reductase, subunit B; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0479.
  
 
  0.814
sdhD
Succinate dehydrogenase, hydrophobic subunit; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2142.
   
 
  0.806
sdhC
Succinate dehydrogenase cytochrome b-556 subunit; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2009.
   
 
  0.805
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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