Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_0974Probable tyrosine phosphatase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx. (489 aa)    
Predicted Functional Partners:
CV_2742
Hypothetical protein.
    
 
 0.677
CV_3848
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0631.
    
 
 0.677
CV_0975
Hypothetical protein.
       0.574
udk
Uridine kinase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0572.
    
 0.473
chiA
Endochitinase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
  
     0.470
CV_0973
Probable ABC transporter, permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.31.2.
       0.468
CV_0065
Probable SWI/SNF family helicase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0553.
    
 
 0.437
CV_1712
Probable phospholipase D/ transphosphatidylase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1502.
  
  0.425
CV_0976
Hypothetical protein.
       0.424
invG
Invasion protein - outer membrane; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1450/TC:1.B.22.3.2.
  
     0.412
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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