STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_0983Probable transmembrane protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/TC:3.D.3.1.1. (360 aa)    
Predicted Functional Partners:
prmA
Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.
       0.803
accC
Biotin carboxylase protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
       0.803
CV_2529
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3159.
  
    0.773
CV_0488
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/TC:1.A.4.1.1.
  
     0.756
CV_3872
Hypothetical protein.
  
     0.689
CV_3904
Conserved hypothetical protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.
  
     0.689
hemY
Protein porphyrin biosynthesis; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3071.
  
     0.682
CV_2765
Probable transmembrane protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3170/TC:3.D.3.1.1.
  
     0.680
CV_2766
Probable transmembrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3170/TC:3.D.3.1.1.
  
     0.661
CV_4254
Probable TonB protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0810.
 
     0.656
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.