Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_1001Hypothetical protein. (154 aa)    
Predicted Functional Partners:
flgM
Negative regulator of flagellin synthesis; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2747.
  
  
 0.959
flgK2
Flagellar hook-associated protein FlgK; Identified by sequence similarity; putative; ORF located using Blastx.
  
 
 0.927
flgK1
Flagellar hook-associated protein 1; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1256.
  
 
 0.927
CV_2985
Hypothetical protein.
     
  0.900
CV_0999
Probable flagella basal body P-ring formation protein flgA; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family.
  
  
 0.880
flgJ
Flagellar protein flgJ; Identified by sequence similarity; putative; ORF located using Blastx/COG1705.
  
  
 0.863
flgL2
Flagellar hook-associated protein 3; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1344.
  
 
 0.861
flgL1
Flagellar hook-associated protein 3; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1344.
  
 
 0.861
fliS2
Flagellar protein FliS; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1516.
  
  
 0.816
CV_3875
Probable flagellar protein FliS; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG1516.
  
  
 0.816
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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