Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
CV_1005Probable cation efflux system; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0053/TC:2.A.4.1.1; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (313 aa)    
Predicted Functional Partners:
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
    0.824
CV_1004
Hypothetical protein.
       0.542
tadA
Probable cytidine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
      0.510
cmk
Cytidylate kinase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0283.
  
    0.493
CV_1006
Hypothetical protein.
       0.474
gltB
Glutamate synthase, large subunit; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0069.
     
 0.460
feoB
Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.
 
   
 0.422
CV_3677
Probable cation efflux system; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1230/TC:2.A.4.1.1.
  
 
 0.411
zntA
Lead,cadmium,zinc and mercury transporting ATPase; Identified by sequence similarity; putative; ORF located using Blastx/COG2217.
 
 
 0.409
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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