Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_1008Probable two-component response regulator; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0784. (396 aa)    
Predicted Functional Partners:
CV_0812
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2199.
 
 0.990
CV_1582
Probable GGDEF family protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2202.
 
 0.986
CV_0208
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2199.
 
 0.984
CV_0387
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2202.
   0.979
CV_4087
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2199.
   0.974
CV_1851
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0840.
  
 0.971
CV_0386
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2202.
 
 0.958
CV_4041
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2202.
    0.924
CV_3504
Probable two-component response regulator; Identified by sequence similarity; putative; ORF located using Blastx.
 
 0.923
CV_2221
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2203.
 
  
 0.914
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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