Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_1043Probable transmembrane protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx. (273 aa)    
Predicted Functional Partners:
CV_2357
Hypothetical protein.
  
     0.631
acpA
Acid phosphatase; Identified by sequence similarity; putative; ORF located using Blastx.
  
     0.566
CV_1177
Probable small heat shock protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0071; Belongs to the small heat shock protein (HSP20) family.
   
    0.460
CV_1044
Hypothetical protein.
       0.439
CV_1045
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1132.
       0.439
CV_1823
Probable transmembrane transporter protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0477/TC:2.A.1.2.22.
  
     0.430
prtR
Transmembrane regulator PrtR; Identified by sequence similarity; putative; ORF located using Blastx.
 
    0.428
CV_3477
Probable Mg2+ transport ATPase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1285/TC:9.B.20.1.2.
  
     0.428
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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