Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CV_1150Probable transcriptional activator, LysR family; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0583; Belongs to the LysR transcriptional regulatory family. (296 aa)    
Predicted Functional Partners:
CV_1151
Probable murein hydrolase exporter; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1380/TC:1.E.14.1.1.
 
     0.868
CV_0218
Probable transcriptional activator; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0583; Belongs to the LysR transcriptional regulatory family.
  
     0.764
lysR-2
Transcriptional activator protein LysR; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0583; Belongs to the LysR transcriptional regulatory family.
  
     0.743
CV_1152
Probable membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1346.
 
     0.714
CV_3257
Probable transcriptional regulator LysR family; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0583; Belongs to the LysR transcriptional regulatory family.
  
     0.714
CV_3665
Probable transcriptional regulator; Identified by sequence similarity; putative; ORF located using Blastx/COG0583; Belongs to the LysR transcriptional regulatory family.
  
     0.696
CV_3405
Probable transcription regulator, LysR family; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG0583.
  
     0.552
CV_0142
Probable transcriptional regulator; Identified by sequence similarity; putative; ORF located using Blastx/COG0583; Belongs to the LysR transcriptional regulatory family.
  
     0.511
CV_0716
Probable transcriptional regulator; Identified by sequence similarity; putative; ORF located using Blastx/COG0583; Belongs to the LysR transcriptional regulatory family.
  
     0.494
CV_1631
Probable transcriptional regulator, LysR family; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG0583; Belongs to the LysR transcriptional regulatory family.
  
     0.491
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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