STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_1168Probable MFS transporter; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.21.1. (400 aa)    
Predicted Functional Partners:
fepG
Enterobactin-iron transport system permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0609/TC:3.A.1.14.2; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
 0.687
CV_2798
Probable macrolide efflux protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0477/TC:2.A.1.21.1.
  
     0.571
CV_1167
Probable ABC transporter protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0747.
       0.554
fepB
Ferrienterobactin-binding periplasmic protein precursor; Identified by sequence similarity; putative; ORF located using Blastx/COG0614.
   
  
 0.544
entE
2,3-dihydroxybenzoate-AMP ligase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1021/TC:9.B.17.1.4.
  
  
 0.524
fes
Enterochelin esterase; Identified by sequence similarity; putative; ORF located using Blastx/COG2382.
   
  
 0.468
CV_0403
Probable transport protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG0477/TC:2.A.1.21.4.
  
     0.456
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.