STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_1196Probable binding-protein-dependent transport system; Identified by sequence similarity; putative; ORF located using Blastx/COG1174/TC:3.A.1.12.4. (220 aa)    
Predicted Functional Partners:
CV_1195
Probable ABC transporter periplasmic binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1732/TC:3.A.1.12.4.
 
 0.999
CV_4392
Probable ABC transporter; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG1732/TC:3.A.1.12.3.
 
 0.998
CV_1197
Probable ABC-type proline/glycine betaine transport systems, ATPase component; Identified by sequence similarity; putative; ORF located using Blastx/COG1125.
 0.996
CV_4394
Probable ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1125/TC:3.A.1.12.4.
 0.991
CV_1194
Probable ABC-type transport systems, permease components; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1174/TC:3.A.1.12.4.
 
   
0.913
CV_1193
Hypothetical protein.
       0.561
CV_1813
Probable nitroreductase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0778.
 
      0.519
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.