Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_1202Probable ribonuclease precursor; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx. (147 aa)    
Predicted Functional Partners:
CV_1201
Probable Barstar; Identified by sequence similarity; putative; ORF located using Blastx/COG2732.
  
 
 0.973
CV_1200
Hypothetical protein.
       0.741
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.586
mrp
Mrp protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
       0.556
CV_0884
Hypothetical protein.
  
     0.514
CV_3778
Hypothetical protein.
  
     0.510
CV_0689
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
  
     0.429
CV_1205
Probable multidrug translocase protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.2.19.
 
     0.422
endA
Identified by sequence similarity; putative; ORF located using Blastx/COG2356.
  
     0.419
CV_3846
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3591.
  
     0.414
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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