Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CV_1216Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx. (321 aa)    
Predicted Functional Partners:
comF
Competence protein F; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1040.
   
    0.730
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
  
 0.716
CV_3407
Probable prephenate dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/COG0287.
  
    0.713
CV_0689
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
 
   
 0.697
CV_2426
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2135; Belongs to the SOS response-associated peptidase family.
   
    0.682
CV_0686
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3271/TC:3.A.1.110.2.
 
     0.660
CV_1215
Hypothetical protein.
 
     0.611
CV_3853
Hypothetical protein.
 
   
 0.590
CV_1214
Hypothetical protein.
       0.558
rpsU
30S ribosomal protein S21; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0828; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.554
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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