Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_1238Probable rhs-related protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3209. (1132 aa)    
Predicted Functional Partners:
CV_1239
Probable rhs-related transmembrane protein related; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3209.
   
 0.997
CV_4240
Probable chitinase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3325; Belongs to the glycosyl hydrolase 18 family.
 
 
 0.814
CV_1429
Probable Rhs family protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG3209.
 
     0.794
CV_1240
Hypothetical protein.
       0.712
CV_3316
Probable chitinase; Identified by sequence similarity; putative; ORF located using Blastx/COG0178.
  
 
 0.505
mgtA
Mg2+-importing ATPase; Identified by sequence similarity; putative; ORF located using Blastx/COG0474/TC:3.A.3.4.1.
   
  
 0.456
CV_3513
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3220; Belongs to the UPF0276 family.
   
    0.456
CV_3514
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
   
    0.456
CV_2717
Probable extracellular serine protease; Identified by sequence similarity; putative; ORF located using Blastx/COG1404; Belongs to the peptidase S8 family.
 
  
 0.408
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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