Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
betAGlucose-methanol-choline oxidoreductase; Identified by sequence similarity; putative; ORF located using Blastx/COG2303. (550 aa)    
Predicted Functional Partners:
CV_1299
Probable MFS transporter; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.6.4.
  
  
 0.800
CV_3911
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
    
 0.723
holA
DNA-directed DNA polymerase, delta subunit; Identified by sequence similarity; putative; ORF located using Blastx/COG1466.
      
 0.646
holC
DNA polymerase III, chi subunit; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2927.
      
 0.646
CV_2951
Probable acetyltransferase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0454.
 
      0.581
CV_1301
Probable transcriptional regulator, Lys R family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0583; Belongs to the LysR transcriptional regulatory family.
 
     0.579
holB
DNA-directed DNA polymerase III, delta subunit; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0470.
      
 0.525
tyrS
tyrosine-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.
 
      0.516
CV_1302
Probable bacterial regulatory helix-turn-helix proteins, araC family; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2207.
     
 0.509
spaT
Surface presentation of antigens; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0457.
    
 0.487
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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