STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_1302Probable bacterial regulatory helix-turn-helix proteins, araC family; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2207. (284 aa)    
Predicted Functional Partners:
CV_1301
Probable transcriptional regulator, Lys R family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0583; Belongs to the LysR transcriptional regulatory family.
  
    0.762
CV_2313
Probable transcriptional regulator, AraC family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2207.
  
     0.630
CV_2654
Probable transcriptional regulator; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2207.
 
   0.618
CV_2101
Probable transcriptional regulator, AraC family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0693.
 
 
 0.546
CV_1299
Probable MFS transporter; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.6.4.
     
 0.511
betA
Glucose-methanol-choline oxidoreductase; Identified by sequence similarity; putative; ORF located using Blastx/COG2303.
     
 0.509
rhaR
L-rhamnose operon transcriptional activator rhaR; Identified by sequence similarity; putative; ORF located using Blastx.
  
     0.465
CV_0788
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1242.
   
    0.456
tadA
Probable cytidine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
  
  
 0.420
polA
DNA-directed DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.401
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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