Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phbFPhbF protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx. (186 aa)    
Predicted Functional Partners:
CV_1366
Probable phasin; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0840.
 
   
 0.874
phaC
Polyhydroxyalkanoate synthase; Involved in the production of polyhydroxyalkonic acids (PHAs), composed primarily of 3-hydroxybutyric acid (3HB) and 3- hydroxyvaleric acid (3HV).
 
   
 0.831
CV_3374
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
 
   
 0.737
groEL1
Chaperonin 60kD subunit; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
      
 0.600
CV_1368
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0500.
       0.541
phaB
acetoacetyl-CoA reductase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1028.
 
   
 0.498
CV_2843
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1752.
 
     0.440
efp
Elongation factor EF-P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
      
 0.410
CV_1365
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG2866.
       0.404
hmgA
Homogentisate 1,2-dioxygenase; Identified by sequence similarity; putative; ORF located using Blastx/COG3508.
      
 0.401
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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