STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_1386Probable esterase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1647. (492 aa)    
Predicted Functional Partners:
CV_1385
Probable transmembrane protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0477.
       0.792
atoB
acetyl-CoA C-acetyltransferase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0183; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 0.688
fadA
acetyl-CoA C-acyltransferase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0183; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 0.688
phaA
acetyl-CoA C-acetyltransferase; Involved in the production of polyhydroxyalkonic acids (PHAs), composed primarily of 3-hydroxybutyric acid (3HB) and 3- hydroxyvaleric acid (3HV); Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 0.688
catF
Beta-ketoadipyl CoA thiolase; Identified by sequence similarity; putative; ORF located using Blastx/COG0183; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 0.688
CV_3752
Hypothetical protein.
 
     0.636
CV_1766
Probable isovaleryl-CoA dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1960.
  
 0.610
CV_1785
Probable acyl-CoA dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1960.
  
 0.610
caiA
acyl-CoA dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1960.
  
 0.610
CV_2723
Probable acyl-CoA dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1960.
  
 0.610
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.