Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
galMAldose 1-epimerase; Converts alpha-aldose to the beta-anomer. (335 aa)    
Predicted Functional Partners:
glk
Glucokinase; Identified by sequence similarity; putative; ORF located using Blastx/COG0837; Belongs to the bacterial glucokinase family.
    
 0.922
CV_1591
Probable haloacid dehalogenase-like hydrolase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1011.
   
 
  0.902
CV_1397
Probable beta-phosphoglucomutase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0637.
 
  
 0.774
CV_1394
Probable beta-phosphoglucomutase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0637.
 
  
 0.757
dacB
Serine-type D-Ala-D-Ala carboxypeptidase; Identified by sequence similarity; putative; ORF located using Blastx/COG2027.
  
  
 0.714
CV_1398
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0477.
 
     0.695
xylB
Xylulokinase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1070; Belongs to the FGGY kinase family.
 
  
 0.620
CV_1396
Probable ABC transporter, periplasmic substrate-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1840.
     
 0.607
CV_1407
Probable dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0673.
 
  
 0.584
CV_2895
Probable transcriptional regulator protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1940.
 
   
 0.566
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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