STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_1397Probable beta-phosphoglucomutase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0637. (230 aa)    
Predicted Functional Partners:
CV_1396
Probable ABC transporter, periplasmic substrate-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1840.
     
 0.784
galM
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
  
 0.774
CV_1398
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0477.
 
    0.766
CV_2786
Probable MFS metabolite transporter; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0477/TC:2.A.1.27.1.
  
  
 0.665
CV_3092
Probable phosphoglycolate phosphatase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0546.
 
   
 0.618
gph
Phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.
 
  
 0.503
CV_1394
Probable beta-phosphoglucomutase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0637.
 
    
0.455
aspB
Aminotransferase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0399; Belongs to the DegT/DnrJ/EryC1 family.
  
    0.449
DegT
Aspartate aminotransferase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0399; Belongs to the DegT/DnrJ/EryC1 family.
  
    0.449
CV_1402
Probable phosphoglycolate phosphatase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0546.
     
 0.442
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.