Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_1407Probable dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0673. (350 aa)    
Predicted Functional Partners:
DegT
Aspartate aminotransferase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0399; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.839
aspB
Aminotransferase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0399; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.837
CV_1396
Probable ABC transporter, periplasmic substrate-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1840.
     
 0.777
lysS
lysyl-tRNA synthetase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1190; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.773
CV_1403
Probable secreted protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0654.
  
  
 0.747
CV_1402
Probable phosphoglycolate phosphatase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0546.
       0.739
CV_4127
Probable dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0673.
  
     0.735
CV_1399
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0494.
       0.734
mtnP
Probable 5'-methylthioadenosine phosphorylase; Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates; Belongs to the PNP/MTAP phosphorylase family. MTAP subfamily.
       0.732
CV_1401
Probable dihydrorhizobitoxine desaturase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3239.
       0.732
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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