Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sdaCSerine transporter; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0814/TC:2.A.42.2.1. (432 aa)    
Predicted Functional Partners:
sdaA2
L-serine dehydratase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1760; Belongs to the iron-sulfur dependent L-serine dehydratase family.
  
 0.835
sdaA1
L-serine dehydratase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1760; Belongs to the iron-sulfur dependent L-serine dehydratase family.
 
  
 0.792
dps
DNA-binding stress protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0783; Belongs to the Dps family.
    
   0.769
argH
Argininosuccinate lyase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0165.
    
 
 0.677
dnaJ
Heat shock protein dnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, [...]
   
 0.666
queF
Conserved hypothetical protein; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
      0.637
CV_0913
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2990.
  
     0.570
pssA
CDPdiacylglycerol-serine O-phosphatidyltransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1502.
  
 
 
 0.519
dcuB
Anaerobic C4-dicarboxylate membrane transporter protein; Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane; Belongs to the DcuA/DcuB transporter (TC 2.A.13.1) family.
  
  
 0.503
argT
Subunit of the lysine/arginine/ornithine transporter (ABC superfamily); Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0834/TC:3.A.1.3.1; Belongs to the bacterial solute-binding protein 3 family.
      
 0.492
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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