Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_1490Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3553. (93 aa)    
Predicted Functional Partners:
CV_1489
Probable periplasmic substrate-binding transport protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0614.
 
     0.930
CV_1487
Probable iron transport system ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1120/TC:3.A.1.14.3.
 
     0.888
fecD
Ferric citrate transport system permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0609/TC:3.A.1.14.5; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
     0.813
CV_1491
Probable outer membrane receptor; Identified by sequence similarity; putative; ORF located using Blastx/COG4771.
 
     0.710
CV_0299
Probable transcriptional regulator; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0583.
  
     0.441
CV_2894
Probable endoglucanase-related protein; Identified by sequence similarity; putative; ORF located using Blastx.
  
     0.441
CV_1549
Hypothetical protein.
  
     0.416
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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