STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cobWCobalamin synthesis protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0523. (368 aa)    
Predicted Functional Partners:
cbiJ
precorrin-3B C17-methyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/COG1010.
 
   
 0.957
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
 
 
 0.859
cbiC
precorrin-8X methylmutase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2082.
 
   
 0.847
cobN
Cobalamin biosynthesis protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1429.
 
  
 0.835
CV_1559
Probable iron transport system substrate-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0614.
  
  
 0.791
btuR
cob(I)alamin adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids.
 
   
 0.790
CV_1560
Probable iron transport system ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1120/TC:3.A.1.14.3.
  
    0.790
cobL
precorrin-6Y methylase methyltransferase protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2241.
 
   
 0.790
cobB
Cobyrinic acid A,C-diamide synthase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1797.
 
   
 0.788
CV_1555
Probable oxidoreductase protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0778.
 
   
 0.782
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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