Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CV_1572Probable ferredoxin protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3411. (109 aa)    
Predicted Functional Partners:
nuoE
NADH-ubiquinone oxidoreductase, chain E; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1905.
 
 
 0.897
hcnA
Hydrogen cyanide synthase HcnA; Identified by sequence similarity; putative; ORF located using Blastx/COG0446.
  
 
 0.887
nuoM
NADH-ubiquinone oxidoreductase, chain M; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1008/TC:3.D.1.3.1.
  
  
 0.802
CV_1570
Probable chelatase protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1239.
       0.797
cobN
Cobalamin biosynthesis protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1429.
       0.796
cobA1
uroporphyrin-III C-methyltransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0007; Belongs to the precorrin methyltransferase family.
     
 0.790
hoxN
High affinity nickel transporter transmembrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG3376/TC:2.A.52.1.1; Belongs to the NiCoT transporter (TC 2.A.52) family.
       0.790
fadH
2,4-dienoyl-CoA reductase FadH1; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0446.
   
 
 0.785
FadH
2,4-dienoyl-CoA reductase; Identified by sequence similarity; putative; ORF located using Blastx/COG0446.
   
 
 0.785
nuoG
NADH-ubiquinone oxidoreductase, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.
   
 
 0.759
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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