Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_1630Probable oxidoreductase; Identified by sequence similarity; putative; ORF located using Blastx/COG0604; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily. (337 aa)    
Predicted Functional Partners:
entD
Enterobactin synthetase component D; Identified by sequence similarity; putative; ORF located using Blastx/COG2977; Belongs to the P-Pant transferase superfamily.
    
   0.694
CV_1631
Probable transcriptional regulator, LysR family; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG0583; Belongs to the LysR transcriptional regulatory family.
       0.538
CV_1629
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2113.
       0.535
CV_2742
Hypothetical protein.
    
   0.513
CV_3848
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0631.
    
   0.513
CV_0701
Probable oxidoreductase; Identified by sequence similarity; putative; ORF located using Blastx.
  
 
 0.505
CV_0808
Probable zinc-containing alcohol dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2130.
 
 
 0.490
CV_3184
Probable peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 
 0.474
CV_3185
Probable peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 
 0.474
CV_3027
Probable ferredoxin; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0247.
  
   
 0.451
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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