Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_1674Probable isoquinoline 1-oxidoreductase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1529. (723 aa)    
Predicted Functional Partners:
CV_1673
Probable aldehyde dehydrogenase (NAD); Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2080.
 
 0.999
CV_3056
Probable cytochrome c precursor; Identified by sequence similarity; putative; ORF located using Blastx/COG2010.
 
  
 0.926
CV_1675
Probable xanthine dehydrogenase accessory factor; Identified by sequence similarity; putative; ORF located using Blastx/COG1975.
 
  
 0.892
CV_1672
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
       0.485
CV_1671
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0834.
       0.462
coxB
Cytochrome-c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
     
 0.402
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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